Anchorpoints

Gene id
PT15G10510
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT12G10590No description available.Chr12-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G50920CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). CLPC homologue 1 Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo.5-View
AT3G48870Clp ATPase HSP93-III; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import.3-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA06G16890CC_gene:clpC,CC_gene:CLPA,CC_gene:CD4B,CC_gene:CD4A,CC_functional_completeness:complete,PRODUCT:ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A%2C chloroplastic,GO:0019538,GO:0017111,GO:0006289,GO:0005524,GO:0005515,GO:0004518,GO:0003677,GO:0000166,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6+View
MA06G08230CC_gene:clpC,CC_gene:CLPA,CC_gene:CD4B,CC_gene:CD4A,CC_functional_completeness:fragment,PRODUCT:ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A%2C chloroplastic,GO:0017111,GO:0006289,GO:0005524,GO:0004518,GO:0003677,GO:0000166,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS04G32560ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed Chaperone protein ClpC1, chloroplastic4-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_04G24670No description available.Chr04-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI007G08280No description available.scaffold_7-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G042060ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME)%3B contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities%2C AAA-2 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplasticch12+View
SL03G118340ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME)%3B contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities%2C AAA-2ch03-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G13810name=GSVIVG01033000001;chr14+View
VV17G08930name=GSVIVG01008636001;chr17+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G16910No description available.2+View


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