PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT14G13370
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G20840	No description available.	Chr02	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G03020	Thioredoxin superfamily protein Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G62930.1); Has 1690 Blast hits to 1687 proteins in 285 species: Archae - 0; Bacteria - 112; Metazoa - 344; Fungi - 348; Plants - 762; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).	1	-	View
AT3G62930	Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G03020.1); Has 1393 Blast hits to 1390 proteins in 224 species: Archae - 0; Bacteria - 15; Metazoa - 320; Fungi - 249; Plants - 741; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). Thioredoxin superfamily protein	3	-	View
AT2G47870	Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G62950.1); Has 1288 Blast hits to 1284 proteins in 244 species: Archae - 0; Bacteria - 100; Metazoa - 228; Fungi - 164; Plants - 745; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). Thioredoxin superfamily protein	2	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD4G05620	No description available.	Bd4	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00009G01730	No description available.	supercontig_9	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA08G10320	CC_gene:GRXC11,CC_gene:GRXC10,CC_gene:GRXS10,CC_gene:GRXC12,CC_gene:GRXC15,CC_gene:GRXC2,CC_gene:GRXC14,CC_gene:GRXC1,CC_functional_completeness:complete,PRODUCT:Glutaredoxin-C1,GO:0045454,GO:0015035,GO:0009055,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr8	-	View
MA11G05870	CC_gene:GRXS8,CC_gene:GRXC10,CC_gene:GRXC12,CC_gene:GRXS10,CC_gene:GRXC15,CC_gene:GRXC2,CC_gene:GRXC14,CC_gene:GRXC1,CC_functional_completeness:complete,PRODUCT:Glutaredoxin-C1,GO:0045454,GO:0015035,GO:0009055,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS12G35330	OsGrx_C12 - glutaredoxin subgroup III, expressed Putative glutaredoxin-C14	12	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB08G017090	No description available.	chr_8	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI003G35370	No description available.	scaffold_3	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G067440	Glutaredoxin (AHRD V1 ***- B9MZY7_POPTR)%3B contains Interpro domain(s) IPR011905 Glutaredoxin-like%2C plant II	ch01	-	View
SL09G074570	Glutaredoxin (AHRD V1 **** B3F8F2_SOLTU)%3B contains Interpro domain(s) IPR011905 Glutaredoxin-like%2C plant II	ch09	-	View
SL06G008750	Glutaredoxin (AHRD V1 **** B9I9W1_POPTR)%3B contains Interpro domain(s) IPR011905 Glutaredoxin-like%2C plant II	ch06	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G03350	name=GSVIVG01017786001;	chr5	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM10G04990	No description available.	10	-	View