Anchorpoints

Gene id
PT14G07410
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT02G15170No description available.Chr02-View
PT15G13480No description available.Chr15+View
PT12G13260No description available.Chr12+View
PT01G11240No description available.Chr01+View
PT03G11970No description available.Chr03-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G01530AGAMOUS-like 28 (AGL28); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 23 (TAIR:AT1G65360.1); Has 6009 Blast hits to 6009 proteins in 738 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 306; Plants - 4996; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). AGAMOUS-like 281-View
AT2G45650Sequence suggests this encodes a MADS-box transcription factor. Negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis. AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). AGAMOUS-like 62+View
AT3G61120AGAMOUS-like 13 (AGL13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 6 (TAIR:AT2G45650.1); Has 7229 Blast hits to 7228 proteins in 913 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 307; Plants - 6214; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). AGAMOUS-like 133-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00018G01570No description available.supercontig_18-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G092950MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-boxch01+View
SL08G080100MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch08-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G02890name=GSVIVG01018450001;chr16+View
VV15G08570name=GSVIVG01027579001;chr15+View


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Gene id
Species
Description
Chromosome
Strand