Anchorpoints
- Gene id
- PT12G04850
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT15G04020 | No description available. | Chr15 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G18035 | winged-helix DNA-binding transcription factor family protein HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink). A linker histone like protein | 3 | - | View |
AT1G48620 | high mobility group A5 high mobility group A5 (HON5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleolus, nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 6279 Blast hits to 5122 proteins in 583 species: Archae - 2; Bacteria - 683; Metazoa - 2480; Fungi - 1082; Plants - 1303; Viruses - 190; Other Eukaryotes - 539 (source: NCBI BLink). This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation. | 1 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G119130 | Histone H1 (AHRD V1 *-*- Q41025_PEA)%3B contains Interpro domain(s) IPR005818 Histone H1/H5 | ch03 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV17G07000 | name=GSVIVG01008411001; | chr17 | - | View |