PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT11G06090
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G37400	No description available.	Chr01	-	View
PT05G11070	No description available.	Chr05	-	View
PT13G12360	No description available.	Chr13	-	View
PT19G09250	No description available.	Chr19	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G28550	RAB GTPase homolog A1I RAB GTPase homolog A1I (RABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1H (TAIR:AT2G33870.1); Has 26472 Blast hits to 26426 proteins in 734 species: Archae - 24; Bacteria - 151; Metazoa - 13774; Fungi - 3933; Plants - 2930; Viruses - 20; Other Eukaryotes - 5640 (source: NCBI BLink).	1	-	View
AT4G18430	RAB GTPase homolog A1E RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).	4	-	View
AT3G15060	RAB GTPase homolog A1G RAB GTPase homolog A1G (RABA1g); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27884 Blast hits to 27831 proteins in 751 species: Archae - 32; Bacteria - 137; Metazoa - 14654; Fungi - 4198; Plants - 2964; Viruses - 20; Other Eukaryotes - 5879 (source: NCBI BLink).	3	+	View
AT2G33870	RAB GTPase homolog A1H (ArRABA1h); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1I (TAIR:AT1G28550.1); Has 27076 Blast hits to 27025 proteins in 750 species: Archae - 25; Bacteria - 157; Metazoa - 14072; Fungi - 4066; Plants - 2934; Viruses - 20; Other Eukaryotes - 5802 (source: NCBI BLink). RAB GTPase homolog A1H	2	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00131G00800	No description available.	supercontig_131	+	View
CP00007G00110	No description available.	supercontig_7	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS05G48980	ras-related protein, putative, expressed	5	-	View
OS01G47730	ras-related protein, putative, expressed	1	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_05G43130	No description available.	Chr05	-	View
OSINDICA_01G45250	No description available.	Chr01	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB03G030650	No description available.	chr_3	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL10G008840	Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN)%3B contains Interpro domain(s) IPR015595 Rab11-related	ch10	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV12G02400	name=GSVIVG01020653001;	chr12	+	View
VV19G02220	name=GSVIVG01014250001;	chr19	+	View
VV10G01640	name=GSVIVG01021143001;	chr10	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM06G31180	ras-related protein Rab11B	6	-	View