Anchorpoints

Gene id
PT10G20940
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT01G23580No description available.Chr01+View
PT09G02770No description available.Chr09+View
PT08G05120No description available.Chr08+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G59820RESPONSIVE TO HIGH LIGHT 41 (RHL41); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). C2H2-type zinc finger family protein Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G66330No description available.Bd1+View
BD2G54470No description available.Bd2-View
BD2G23160No description available.Bd2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00190G00290No description available.supercontig_190-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA10G03760CC_gene:ZNF238,CC_gene:Znf238,CC_gene:ZFP6,CC_gene:su(Hw),CC_functional_completeness:fragment,PRODUCT:ZOS3-09 - C2H2 zinc finger protein%2C expressed,GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View
MA10G13850CC_gene:snai1,CC_gene:ZNF358,CC_gene:Peg3,CC_gene:su(Hw),CC_gene:ZNF335,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G17150ZOS3-09 - C2H2 zinc finger protein, expressed3-View
OS05G02390ZOS5-02 - C2H2 zinc finger protein, expressed5-View
OS01G62130ZOS1-14 - C2H2 zinc finger protein, expressed1-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G15620No description available.Chr03-View
OSINDICA_01G58830No description available.Chr01-View
OSINDICA_05G01320No description available.Chr05-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G039250No description available.chr_3-View
SB01G039190No description available.chr_1+View
SB09G001560No description available.chr_9-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI005G38300No description available.scaffold_5-View
SI009G46330No description available.scaffold_9+View
SI003G06290No description available.scaffold_3+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G073060Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech11-View
SL06G075780Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech06+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM06G04730ZFP16-1 (LOC100284435), mRNA6+View
ZM01G11620No description available.1-View
ZM09G23650No description available.9+View


Download

Gene id
Species
Description
Chromosome
Strand