Anchorpoints
- Gene id
- PT10G20940
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT01G23580 | No description available. | Chr01 | + | View |
PT09G02770 | No description available. | Chr09 | + | View |
PT08G05120 | No description available. | Chr08 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G59820 | RESPONSIVE TO HIGH LIGHT 41 (RHL41); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). C2H2-type zinc finger family protein Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. | 5 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD1G66330 | No description available. | Bd1 | + | View |
BD2G54470 | No description available. | Bd2 | - | View |
BD2G23160 | No description available. | Bd2 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00190G00290 | No description available. | supercontig_190 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA10G03760 | CC_gene:ZNF238,CC_gene:Znf238,CC_gene:ZFP6,CC_gene:su(Hw),CC_functional_completeness:fragment,PRODUCT:ZOS3-09 - C2H2 zinc finger protein%2C expressed,GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | - | View |
MA10G13850 | CC_gene:snai1,CC_gene:ZNF358,CC_gene:Peg3,CC_gene:su(Hw),CC_gene:ZNF335,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G17150 | ZOS3-09 - C2H2 zinc finger protein, expressed | 3 | - | View |
OS05G02390 | ZOS5-02 - C2H2 zinc finger protein, expressed | 5 | - | View |
OS01G62130 | ZOS1-14 - C2H2 zinc finger protein, expressed | 1 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_03G15620 | No description available. | Chr03 | - | View |
OSINDICA_01G58830 | No description available. | Chr01 | - | View |
OSINDICA_05G01320 | No description available. | Chr05 | - | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB03G039250 | No description available. | chr_3 | - | View |
SB01G039190 | No description available. | chr_1 | + | View |
SB09G001560 | No description available. | chr_9 | - | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI005G38300 | No description available. | scaffold_5 | - | View |
SI009G46330 | No description available. | scaffold_9 | + | View |
SI003G06290 | No description available. | scaffold_3 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL11G073060 | Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-type | ch11 | - | View |
SL06G075780 | Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-type | ch06 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM06G04730 | ZFP16-1 (LOC100284435), mRNA | 6 | + | View |
ZM01G11620 | No description available. | 1 | - | View |
ZM09G23650 | No description available. | 9 | + | View |