Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- PT10G20640
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT08G05410 | No description available. | Chr08 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G37570 | HSP20-like chaperones superfamily protein sodium- and lithium-tolerant 1 (SLT1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G02480.1); Has 106 Blast hits to 104 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene. | 2 | - | View |
| AT5G02480 | HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT2G37570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). HSP20-like chaperones superfamily protein | 5 | + | View |
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD1G66480 | No description available. | Bd1 | - | View |
| BD2G03340 | No description available. | Bd2 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00190G00020 | No description available. | supercontig_190 | + | View |
| CP00001G03790 | No description available. | supercontig_1 | - | View |
Musa acuminata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MA10G02550 | CC_gene:infB,CC_gene:ORF1,CC_functional_completeness:complete,PRODUCT:SLT1 protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | + | View |
| MA11G25170 | CC_gene:infB,CC_gene:WDR60,CC_functional_completeness:complete,PRODUCT:SLT1 protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr11 | + | View |
| MA02G16630 | CC_gene:hspC2,CC_gene:SCPL49,CC_gene:HSP22.3,CC_gene:infB,CC_gene:WDR60,CC_gene:shq1,CC_functional_completeness:complete,PRODUCT:SLT1 protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr2 | - | View |
| MA07G15590 | CC_gene:WDR60,CC_gene:yisV,CC_gene:infB,CC_gene:Cht3,CC_functional_completeness:complete,PRODUCT:SLT1 protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr7 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS01G05790 | SLT1 protein, putative, expressed | 1 | + | View |
| OS03G16910 | SLT1 protein, putative, expressed | 3 | + | View |
| OS01G62300 | SLT1 protein, putative, expressed | 1 | - | View |
Oryza sativa ssp. indica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OSINDICA_01G05250 | No description available. | Chr01 | + | View |
| OSINDICA_03G15340 | No description available. | Chr03 | + | View |
| OSINDICA_01G59000 | No description available. | Chr01 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB03G006020 | No description available. | chr_3 | - | View |
| SB03G039370 | No description available. | chr_3 | - | View |
Setaria italica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SI009G46550 | No description available. | scaffold_9 | - | View |
| SI005G10410 | No description available. | scaffold_5 | + | View |
| SI005G38450 | No description available. | scaffold_5 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL10G086420 | SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC)%3B contains Interpro domain(s) IPR008978 HSP20-like chaperone | ch10 | - | View |
| SL09G010640 | SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC) | ch09 | - | View |
| SL11G066090 | SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC)%3B contains Interpro domain(s) IPR008978 HSP20-like chaperone | ch11 | + | View |
| SL04G011460 | SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC) | ch04 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV13G05440 | name=GSVIVG01016565001; | chr13 | - | View |
| VV08G14740 | name=GSVIVG01034193001; | chr8 | - | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM01G11440 | LOC100281384 | 1 | + | View |
| ZM09G23750 | No description available. | 9 | - | View |
| ZM03G05010 | No description available. | 3 | - | View |