Anchorpoints
- Gene id
- PT10G16110
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT17G09000 | No description available. | Chr17 | + | View |
PT04G12540 | No description available. | Chr04 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G69330 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 288 Blast hits to 287 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). RING/U-box superfamily protein | 1 | - | View |
AT3G29270 | RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 253 Blast hits to 253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). RING/U-box superfamily protein | 3 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD1G70360 | No description available. | Bd1 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00001G00960 | No description available. | supercontig_1 | + | View |
CP00014G01430 | No description available. | supercontig_14 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA04G33600 | CC_gene:SH3RF1,CC_gene:RNF222,CC_gene:Rnf208,CC_gene:RNF208,CC_gene:RNF182,CC_gene:Rnf222,CC_gene:Trim32,CC_gene:TRIM32,CC_functional_completeness:complete,PRODUCT:RING zinc finger protein-like%2C putative%2C expressed,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr4 | + | View |
MA04G14750 | CC_gene:Rnf208,CC_gene:sip5,CC_gene:RNF208,CC_gene:sh3rf1,CC_gene:RNF222,CC_gene:Rnf222,CC_gene:Trim32,CC_gene:TRIM32,CC_functional_completeness:complete,PRODUCT:RING zinc finger protein-like%2C putative%2C expressed,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr4 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G11260 | RING zinc finger protein-like, putative, expressed | 3 | + | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_03G09770 | No description available. | Chr03 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB01G043230 | No description available. | chr_1 | - | View |
SB01G032180 | No description available. | chr_1 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI009G51050 | No description available. | scaffold_9 | - | View |
SI009G37220 | No description available. | scaffold_9 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G088570 | RING zinc finger protein-like (AHRD V1 ***- Q9LHJ7_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch02 | + | View |
SL01G011030 | RING zinc finger protein-like (AHRD V1 **-- B6SSZ2_MAIZE)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch01 | + | View |
SL05G012560 | RING zinc finger protein-like (AHRD V1 **-- Q9LHJ7_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-type | ch05 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV17G03120 | name=GSVIVG01007932001; | chr17 | + | View |
VV14G02800 | name=GSVIVG01011489001; | chr14 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM09G26190 | RING zinc finger protein-like | 9 | - | View |
ZM09G19720 | RING zinc finger protein-like | 9 | + | View |