Anchorpoints

Gene id
PT10G16110
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT17G09000No description available.Chr17+View
PT04G12540No description available.Chr04-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G69330RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 288 Blast hits to 287 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). RING/U-box superfamily protein1-View
AT3G29270RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 253 Blast hits to 253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). RING/U-box superfamily protein3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G70360No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00960No description available.supercontig_1+View
CP00014G01430No description available.supercontig_14+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA04G33600CC_gene:SH3RF1,CC_gene:RNF222,CC_gene:Rnf208,CC_gene:RNF208,CC_gene:RNF182,CC_gene:Rnf222,CC_gene:Trim32,CC_gene:TRIM32,CC_functional_completeness:complete,PRODUCT:RING zinc finger protein-like%2C putative%2C expressed,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr4+View
MA04G14750CC_gene:Rnf208,CC_gene:sip5,CC_gene:RNF208,CC_gene:sh3rf1,CC_gene:RNF222,CC_gene:Rnf222,CC_gene:Trim32,CC_gene:TRIM32,CC_functional_completeness:complete,PRODUCT:RING zinc finger protein-like%2C putative%2C expressed,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr4+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G11260RING zinc finger protein-like, putative, expressed3+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G09770No description available.Chr03+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G043230No description available.chr_1-View
SB01G032180No description available.chr_1+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G51050No description available.scaffold_9-View
SI009G37220No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G088570RING zinc finger protein-like (AHRD V1 ***- Q9LHJ7_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech02+View
SL01G011030RING zinc finger protein-like (AHRD V1 **-- B6SSZ2_MAIZE)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech01+View
SL05G012560RING zinc finger protein-like (AHRD V1 **-- Q9LHJ7_ARATH)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech05-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03120name=GSVIVG01007932001;chr17+View
VV14G02800name=GSVIVG01011489001;chr14+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM09G26190RING zinc finger protein-like9-View
ZM09G19720RING zinc finger protein-like9+View


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Gene id
Species
Description
Chromosome
Strand