Anchorpoints

Gene id
PT10G10960
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT04G08750No description available.Chr04-View
PT08G13240No description available.Chr08+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G14900high mobility group A high mobility group A (HMGA); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, nucleosome assembly; LOCATED IN: cytosol, nuclear chromatin, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), High mobility group, HMG-I/HMG-Y (InterPro:IPR000116), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 1377 Blast hits to 1228 proteins in 223 species: Archae - 0; Bacteria - 119; Metazoa - 428; Fungi - 179; Plants - 544; Viruses - 9; Other Eukaryotes - 98 (source: NCBI BLink). Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00116G00540No description available.supercontig_116+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G007890High mobility group protein (AHRD V1 *--- Q42461_CANGL)%3B contains Interpro domain(s) IPR005818 Histone H1/H5ch04+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G06210name=GSVIVG01011701001;chr1+View


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Gene id
Species
Description
Chromosome
Strand