Anchorpoints

Gene id
PT09G02800
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT10G23060No description available.Chr10+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G28720Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3535 Blast hits to 3431 proteins in 349 species: Archae - 0; Bacteria - 57; Metazoa - 2253; Fungi - 226; Plants - 491; Viruses - 2; Other Eukaryotes - 506 (source: NCBI BLink). Histone superfamily protein2+View
AT5G02570Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G37470.1); Has 3216 Blast hits to 3216 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 2228; Fungi - 200; Plants - 462; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink). Histone superfamily protein5-View
AT1G07790HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3418 Blast hits to 3391 proteins in 380 species: Archae - 0; Bacteria - 96; Metazoa - 2240; Fungi - 204; Plants - 476; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink). Histone superfamily protein Encodes a histone 2B (H2B) protein.1+View
AT5G59910HTB4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Histone superfamily protein5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G66380No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00190G00160No description available.supercontig_190-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA09G04180CC_gene:HIS2B,CC_gene:H2B,CC_gene:H2B-3,CC_gene:At1g07790,CC_gene:At2g28720,CC_gene:At5g02570,CC_functional_completeness:complete,PRODUCT:Probable histone H2B.1,GO:0006334,GO:0005634,GO:0003677,GO:0000786,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr9-View
MA10G02570CC_gene:H2B-3,CC_gene:H2B.2,CC_gene:H2B.11,CC_functional_completeness:fragment,PRODUCT:Histone H2B.11,GO:0006334,GO:0005634,GO:0003677,GO:0000786,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G17084Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed3+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G15560No description available.Chr03+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G039260No description available.chr_1-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI005G38380No description available.scaffold_5-View
SI009G46380No description available.scaffold_9-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G005390Histone H2B (AHRD V1 ***- D7LK79_ARALY)%3B contains Interpro domain(s) IPR000558 Histone H2Bch06+View
SL06G075800Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU)%3B contains Interpro domain(s) IPR000558 Histone H2Bch06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G04070name=GSVIVG01025025001;chr6+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM09G23670Histone H2B9-View


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Gene id
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Description
Chromosome
Strand