PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT08G17040
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT10G06750	No description available.	Chr10	+	View
PT02G25860	No description available.	Chr02	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G33410	RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G14300.1); Has 110468 Blast hits to 48661 proteins in 2208 species: Archae - 78; Bacteria - 27657; Metazoa - 45421; Fungi - 8288; Plants - 12503; Viruses - 709; Other Eukaryotes - 15812 (source: NCBI BLink). RNA-binding (RRM/RBD/RNP motifs) family protein	2	+	View
AT4G14300	RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G33410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). RNA-binding (RRM/RBD/RNP motifs) family protein	4	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD3G28430	No description available.	Bd3	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00165G00450	No description available.	supercontig_165	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS10G33230	RNA recognition motif containing protein, putative, expressed	10	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI009G23250	No description available.	scaffold_9	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL09G090520	Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE)%3B contains Interpro domain(s) IPR012677 Nucleotide-binding%2C alpha-beta plait	ch09	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G08780	name=GSVIVG01027891001;	chr5	-	View
VV07G11420	name=GSVIVG01028394001;	chr7	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM01G42400	No description available.	1	-	View