PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT08G16890
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G03550	No description available.	Chr02	-	View
PT10G06950	No description available.	Chr10	-	View
PT05G22750	No description available.	Chr05	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G23380	ROP-interactive CRIB motif-containing protein 5 encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue. ROP-interactive CRIB motif-containing protein 5 (RIC5); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube growth; LOCATED IN: apical plasma membrane; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1); Has 223 Blast hits to 223 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 6; Plants - 165; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).	3	+	View
AT1G04450	Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It ROP-interactive CRIB motif-containing protein 3 ROP-interactive CRIB motif-containing protein 3 (RIC3); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1); Has 189 Blast hits to 189 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).	1	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00380G00020	No description available.	supercontig_380	-	View
CP00165G00290	No description available.	supercontig_165	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA01G21290	CC_gene:bst-1,CC_functional_completeness:modules,PRODUCT:Putative Desiccation-associated protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr1	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G008240	Rop-interactive crib motif-containing protein 3 (AHRD V1 *--- D7KDE9_ARALY)%3B contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding	ch06	-	View
SL06G083800	Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY)%3B contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding	ch06	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G08490	name=GSVIVG01027848001;	chr5	+	View