Anchorpoints

Gene id
PT08G08830
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT10G16720No description available.Chr10+View
PT17G08530No description available.Chr17-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G69530expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).1+View
AT2G03090member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A15 expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2-View
AT3G29030expansin A5 (EXPA5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2184 Blast hits to 2181 proteins in 162 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 43; Plants - 2080; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A53-View
AT1G26770expansin A10 expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00460No description available.supercontig_1-View
CP00014G00940No description available.supercontig_14-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA06G33100CC_gene:EXPA5,CC_gene:EXPA2,CC_gene:EXPA8,CC_gene:EXPA14,CC_gene:EXPA4,CC_gene:EXPA1,CC_gene:EXPA15,CC_functional_completeness:complete,PRODUCT:Expansin-A15,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6-View
MA06G10990CC_gene:EXPA4,CC_gene:EXPA14,CC_gene:EXPA8,CC_gene:EXPA10,CC_gene:EXPA1,CC_gene:EXPA15,CC_functional_completeness:complete,PRODUCT:Expansin-A15,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G023980No description available.chr_4+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G010890Expansin 2 (AHRD V1 ***- B1A2I4_9ROSI)%3B contains Interpro domain(s) IPR002963 Expansinch01+View
SL05G007830Expansin 2 (AHRD V1 ***- Q9FUM2_PRUAV)%3B contains Interpro domain(s) IPR002963 Expansinch05+View
SL02G088100Expansin (AHRD V1 ***- Q9ZP31_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch02-View
SL03G115890Expansin (AHRD V1 ***- Q9FVG9_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch03+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G02400name=GSVIVG01011437001;chr14-View
VV17G03550name=GSVIVG01007987001;chr17-View
VV01G11950name=GSVIVG01019965001;chr1-View


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Chromosome
Strand