Anchorpoints

Gene id
PT08G07480
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT10G18250No description available.Chr10-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G56170Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease. Ca-2+ dependent nuclease (CAN); FUNCTIONS IN: nuclease activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Thermonuclease active site (InterPro:IPR002071); BEST Arabidopsis thaliana protein match is: Staphylococcal nuclease homologue (TAIR:AT2G40410.2); Has 3061 Blast hits to 3061 proteins in 776 species: Archae - 16; Bacteria - 1825; Metazoa - 0; Fungi - 167; Plants - 86; Viruses - 2; Other Eukaryotes - 965 (source: NCBI BLink). Ca-2+ dependent nuclease3+View
AT2G40410Staphylococcal nuclease homologue Encodes a Ca(2+)-dependent nuclease that can degrade both DNA and RNA. Staphylococcal nuclease homologue; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071); BEST Arabidopsis thaliana protein match is: Ca-2+ dependent nuclease (TAIR:AT3G56170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00019G01100No description available.supercontig_19-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA09G04810CC_gene:gdhB,CC_gene:petC,CC_gene:PIGH,CC_gene:Pigh,CC_functional_completeness:fragment,PRODUCT:phosphatidylinositolglycan-related%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr9+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS12G01830staphylococcal nuclease homologue, putative, expressed12+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_01G06650No description available.Chr01+View
OSINDICA_12G01000No description available.Chr12+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G004790No description available.chr_3-View
SB08G000830No description available.chr_8+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI008G01670No description available.scaffold_8-View
SI005G11600No description available.scaffold_5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G050720Nuclease (AHRD V1 **** B6STR9_MAIZE)%3B contains Interpro domain(s) IPR006021 Staphylococcal nuclease (SNase-like)ch06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G09730name=GSVIVG01032729001;chr13+View


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Gene id
Species
Description
Chromosome
Strand