Anchorpoints

Gene id
PT08G02590
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT10G23440No description available.Chr10+View
PT06G11600No description available.Chr06-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G04560Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. HhH-GPD base excision DNA repair family protein DEMETER (DME); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3806 Blast hits to 3649 proteins in 1364 species: Archae - 237; Bacteria - 2338; Metazoa - 256; Fungi - 124; Plants - 347; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).5+View
AT2G36490demeter-like 1 (DML1); FUNCTIONS IN: protein binding, DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: DNA repair, chromatin silencing, negative regulation of chromatin silencing, DNA methylation, DNA demethylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts. demeter-like 12-View
AT3G10010demeter-like 2 demeter-like 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3292 Blast hits to 3211 proteins in 1332 species: Archae - 246; Bacteria - 2331; Metazoa - 80; Fungi - 82; Plants - 273; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink). Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.3-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00005G00770No description available.supercontig_5-View
CP00128G00520No description available.supercontig_128-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA10G15850CC_gene:MJ1434,CC_gene:NTH1,CC_gene:nth,CC_gene:DML3,CC_gene:DML2,CC_gene:ROS1,CC_gene:DME,CC_functional_completeness:fragment,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_7.assembly12x (Fragment),GO:0006284,GO:0006281,GO:0004519,GO:0003824,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:4.2.99.18chr10+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G007580HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1)%3B contains Interpro domain(s) IPR003265 HhH-GPD domainch11-View
SL09G009080Repressor of silencing 1 (AHRD V1 **-- A4PF88_TOBAC)%3B contains Interpro domain(s) IPR003265 HhH-GPD domainch09+View
SL10G083630Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC)%3B contains Interpro domain(s) IPR003265 HhH-GPD domainch10-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G11790name=GSVIVG01034713001;chr13-View
VV08G11460name=GSVIVG01033777001;chr8-View
VV06G08340name=GSVIVG01031400001;chr6+View


Download

Gene id
Species
Description
Chromosome
Strand