Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- PT08G01710
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT10G24100 | No description available. | Chr10 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G04770 | Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane. cationic amino acid transporter 6 cationic amino acid transporter 6 (CAT6); CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 7 (TAIR:AT3G10600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | 5 | + | View |
| AT3G10600 | cationic amino acid transporter 7 cationic amino acid transporter 7 (CAT7); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 6 (TAIR:AT5G04770.1); Has 33338 Blast hits to 33265 proteins in 2295 species: Archae - 501; Bacteria - 26895; Metazoa - 1960; Fungi - 2417; Plants - 365; Viruses - 0; Other Eukaryotes - 1200 (source: NCBI BLink). Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. | 3 | + | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS11G05690 | amino acid permease family protein, putative, expressed | 11 | + | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB08G003530 | No description available. | chr_8 | + | View |
Setaria italica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SI008G03570 | No description available. | scaffold_8 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL11G006710 | Cationic amino acid transporter (AHRD V1 ***- B9HVV3_POPTR)%3B contains Interpro domain(s) IPR015606 Cationic amino acid transporter | ch11 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV13G11390 | name=GSVIVG01034656001; | chr13 | + | View |