PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT07G09610
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G07290	No description available.	Chr05	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G40000	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G22400.1); Has 8835 Blast hits to 8804 proteins in 2376 species: Archae - 282; Bacteria - 6104; Metazoa - 590; Fungi - 311; Plants - 234; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink).	4	-	View
AT2G22400	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G40000.1); Has 8976 Blast hits to 8942 proteins in 2412 species: Archae - 298; Bacteria - 6215; Metazoa - 583; Fungi - 307; Plants - 251; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).	2	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD3G38650	No description available.	Bd3	-	View
BD4G32840	No description available.	Bd4	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00055G00800	No description available.	supercontig_55	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_09G23820	No description available.	Chr09	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB07G029085	No description available.	chr_7	+	View
SB02G027340	No description available.	chr_2	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI006G18810	No description available.	scaffold_6	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL11G010110	Ribosomal RNA small subunit methyltransferase F (AHRD V1 -- RSMF_SHESH)%3B contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	ch11	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV07G02620	name=GSVIVG01003416001;	chr7	-	View