Anchorpoints
- Gene id
- PT06G25940
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT18G11410 | No description available. | Chr18 | + | View |
PT18G02270 | No description available. | Chr18 | + | View |
PT06G19000 | No description available. | Chr06 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G32040 | KNOTTED1-like homeobox gene 5 A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. KNOTTED1-like homeobox gene 5 (KNAT5); CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.2); Has 6199 Blast hits to 6196 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2065; Fungi - 300; Plants - 3657; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | 4 | + | View |
AT5G11060 | KNOTTED1-like homeobox gene 4 (KNAT4); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 312; Plants - 3367; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). KNOTTED1-like homeobox gene 4 A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. | 5 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD1G30730 | No description available. | Bd1 | - | View |
BD3G19927 | No description available. | Bd3 | + | View |
BD3G06170 | No description available. | Bd3 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00046G00920 | No description available. | supercontig_46 | - | View |
CP00187G00280 | No description available. | supercontig_187 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA03G13670 | CC_gene:HOS59,CC_gene:HOS58,CC_gene:KNAT5,CC_gene:LET12,CC_gene:OSH45,CC_gene:KNAT4,CC_gene:KNAT3,CC_functional_completeness:modules,PRODUCT:homeobox protein knotted-1%2C putative%2C expressed,GO:0043565,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr3 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS02G08544 | Homeobox protein knotted-1-like 2 homeobox protein knotted-1, putative, expressed | 2 | + | View |
OS06G43860 | homeobox protein knotted-1, putative, expressed Homeobox protein knotted-1-like 11 | 6 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_06G39660 | No description available. | Chr06 | - | View |
OSINDICA_02G08360 | No description available. | Chr02 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB04G005620 | No description available. | chr_4 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI004G20380 | No description available. | scaffold_4 | + | View |
SI001G06390 | No description available. | scaffold_1 | - | View |
SI006G10720 | No description available. | scaffold_6 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G010410 | Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE)%3B contains Interpro domain(s) IPR005541 KNOX2 | ch12 | + | View |
SL07G007120 | Homeobox protein knotted-1-like LET12 Homeobox protein knotted-1-like 3 (AHRD V1 *-*- B6T3D1_MAIZE)%3B contains Interpro domain(s) IPR005541 KNOX2 | ch07 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV04G12730 | name=GSVIVG01035921001; | chr4 | + | View |
VV11G01750 | name=GSVIVG01012897001; | chr11 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM05G21500 | Homeobox protein knotted-1-like 7 Fragment Homeobox protein knotted-1-like 6 Homeobox protein knotted-1-like 7 | 5 | - | View |
ZM09G14230 | Homeobox protein knotted-1-like 2 Homeobox protein knotted-1-like 2 Fragment ;Homeobox protein knotted-1-like 2 Fragment | 9 | + | View |