Anchorpoints
- Gene id
- PT05G21980
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT08G16230 | No description available. | Chr08 | + | View |
PT02G04310 | No description available. | Chr02 | - | View |
PT13G04270 | No description available. | Chr13 | + | View |
PT10G07680 | No description available. | Chr10 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G06760 | winged-helix DNA-binding transcription factor family protein winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink). | 1 | - | View |
AT2G30620 | winged-helix DNA-binding transcription factor family protein winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G06760.1); Has 19743 Blast hits to 11193 proteins in 1486 species: Archae - 45; Bacteria - 7849; Metazoa - 5019; Fungi - 1189; Plants - 983; Viruses - 143; Other Eukaryotes - 4515 (source: NCBI BLink). | 2 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD1G05330 | No description available. | Bd1 | - | View |
BD1G55260 | No description available. | Bd1 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00052G01390 | No description available. | supercontig_52 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA05G03350 | CC_gene:At1g06760,CC_gene:H1-I,CC_gene:At2g30620,CC_functional_completeness:modules,PRODUCT:Histone-like protein (Fragment),GO:0006334,GO:0005634,GO:0003677,GO:0000786,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr5 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS07G08710 | AT hook-containing DNA-binding protein, putative, expressed | 7 | + | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_03G55790 | No description available. | Chr03 | + | View |
OSINDICA_07G06970 | No description available. | Chr07 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB01G005010 | No description available. | chr_1 | - | View |
SB02G004730 | No description available. | chr_2 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI002G05780 | No description available. | scaffold_2 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G066100 | Histone H1 (AHRD V1 *-*- Q40509_TOBAC)%3B contains Interpro domain(s) IPR005818 Histone H1/H5 Histone H1 | ch09 | + | View |
SL09G083380 | Histone H1 (AHRD V1 *-*- B6TC95_MAIZE)%3B contains Interpro domain(s) IPR005818 Histone H1/H5 | ch09 | - | View |
SL06G084020 | Histone H1 (AHRD V1 *-*- O65820_SOLLC)%3B contains Interpro domain(s) IPR005818 Histone H1/H5 | ch06 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV14G14890 | name=GSVIVG01036230001; | chr14 | - | View |
VV05G06020 | name=GSVIVG01018114001; | chr5 | + | View |
VV07G01750 | name=GSVIVG01000755001; | chr7 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G56300 | Histone H1 | 1 | + | View |