Anchorpoints

Gene id
PT04G02040
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT01G41950No description available.Chr01+View
PT11G02500No description available.Chr11-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G04890protodermal factor 2 (PDF2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. protodermal factor 24-View
AT4G21750MERISTEM LAYER 1 (ATML1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein4+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00198G00180No description available.supercontig_198+View
CP00097G00470No description available.supercontig_97-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G005330Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch10-View
SL03G031760Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch03-View
SL02G080260Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL)%3B contains Interpro domain(s) IPR002913 Lipid-binding STARTch02+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV10G00420name=GSVIVG01012643001;chr10+View
VV19G00570name=GSVIVG01001986001;chr19+View


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