Anchorpoints

Gene id
PT03G20500
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT09G06230No description available.Chr09+View
PT01G01890No description available.Chr01-View
PT01G26790No description available.Chr01+View
PT16G05270No description available.Chr16-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G51220WIP domain protein 5 (WIP5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 19383 Blast hits to 11948 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 18075; Fungi - 148; Plants - 690; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink). WIP domain protein 5 Encodes a WIP domain containing protein. Putative target of WRKY53.1-View
AT3G20880WIP domain protein 4 WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).3-View
AT3G57670Encodes a a C2H2/C2HC zinc finger transcription factor specifically expressed in the transmitting tract and involved in transmitting tract development and pollen tube growth. NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink). C2H2-type zinc finger family protein3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G39820No description available.Bd3+View
BD1G36067No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00084G00730No description available.supercontig_84+View
CP00085G01340No description available.supercontig_85-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA03G11260CC_gene:FEZF2,CC_gene:ATMIN,CC_gene:Atmin,CC_gene:MGP,CC_gene:NUC,CC_gene:JKD,CC_gene:STOP1,CC_gene:TT1,CC_functional_completeness:complete,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_7.assembly12x (Fragment),GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS09G31140ZOS9-16 - C2H2 zinc finger protein, expressed9+View
OS08G39390ZOS8-10 - C2H2 zinc finger protein, expressed8+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_02G09720No description available.Chr02-View
OSINDICA_08G37760No description available.Chr08+View
OSINDICA_09G25010No description available.Chr09+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB07G028010No description available.chr_7-View
SB10G024040No description available.chr_10+View
SB02G028220No description available.chr_2+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G22290No description available.scaffold_4-View
SI002G25720No description available.scaffold_2+View
SI006G20200No description available.scaffold_6+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G062060Zinc finger protein (AHRD V1 ***- D7KHP2_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech11-View
SL01G087050Zinc finger-like protein (AHRD V1 **-- Q9LT33_ARATH)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech01-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G07630name=GSVIVG01032076001;chr13+View
VV06G06290name=GSVIVG01025301001;chr6-View
VV08G07830name=GSVIVG01033329001;chr8-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G32230No description available.1+View
ZM07G17760No description available.7+View
ZM06G13360No description available.6-View
ZM09G15640No description available.9-View


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Gene id
Species
Description
Chromosome
Strand