Anchorpoints
- Gene id
- PT03G20500
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT09G06230 | No description available. | Chr09 | + | View |
PT01G01890 | No description available. | Chr01 | - | View |
PT01G26790 | No description available. | Chr01 | + | View |
PT16G05270 | No description available. | Chr16 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G51220 | WIP domain protein 5 (WIP5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 19383 Blast hits to 11948 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 18075; Fungi - 148; Plants - 690; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink). WIP domain protein 5 Encodes a WIP domain containing protein. Putative target of WRKY53. | 1 | - | View |
AT3G20880 | WIP domain protein 4 WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). | 3 | - | View |
AT3G57670 | Encodes a a C2H2/C2HC zinc finger transcription factor specifically expressed in the transmitting tract and involved in transmitting tract development and pollen tube growth. NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink). C2H2-type zinc finger family protein | 3 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD3G39820 | No description available. | Bd3 | + | View |
BD1G36067 | No description available. | Bd1 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00084G00730 | No description available. | supercontig_84 | + | View |
CP00085G01340 | No description available. | supercontig_85 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA03G11260 | CC_gene:FEZF2,CC_gene:ATMIN,CC_gene:Atmin,CC_gene:MGP,CC_gene:NUC,CC_gene:JKD,CC_gene:STOP1,CC_gene:TT1,CC_functional_completeness:complete,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_7.assembly12x (Fragment),GO:0008270,GO:0005622,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr3 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS09G31140 | ZOS9-16 - C2H2 zinc finger protein, expressed | 9 | + | View |
OS08G39390 | ZOS8-10 - C2H2 zinc finger protein, expressed | 8 | + | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_02G09720 | No description available. | Chr02 | - | View |
OSINDICA_08G37760 | No description available. | Chr08 | + | View |
OSINDICA_09G25010 | No description available. | Chr09 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB07G028010 | No description available. | chr_7 | - | View |
SB10G024040 | No description available. | chr_10 | + | View |
SB02G028220 | No description available. | chr_2 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI004G22290 | No description available. | scaffold_4 | - | View |
SI002G25720 | No description available. | scaffold_2 | + | View |
SI006G20200 | No description available. | scaffold_6 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL11G062060 | Zinc finger protein (AHRD V1 ***- D7KHP2_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-type | ch11 | - | View |
SL01G087050 | Zinc finger-like protein (AHRD V1 **-- Q9LT33_ARATH)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-type | ch01 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV13G07630 | name=GSVIVG01032076001; | chr13 | + | View |
VV06G06290 | name=GSVIVG01025301001; | chr6 | - | View |
VV08G07830 | name=GSVIVG01033329001; | chr8 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G32230 | No description available. | 1 | + | View |
ZM07G17760 | No description available. | 7 | + | View |
ZM06G13360 | No description available. | 6 | - | View |
ZM09G15640 | No description available. | 9 | - | View |