Anchorpoints

Gene id
PT02G14400
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT14G05950No description available.Chr14+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G45140plant VAP homolog 12 plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.2+View
AT3G60600vesicle associated protein (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 141; Plants - 434; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. vesicle associated protein3+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA05G21450CC_gene:Vapa,CC_gene:SCS2,CC_gene:VAPA,CC_gene:SPAC17C9.12,CC_gene:SPBC16G5.05c,CC_functional_completeness:complete,PRODUCT:MSP domain containing protein%2C expressed,GO:0005198,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr5-View
MA11G04470CC_gene:Vapa,CC_gene:SPAC17C9.12,CC_gene:VAPA,CC_gene:SPBC16G5.05c,CC_functional_completeness:complete,PRODUCT:MSP domain containing protein%2C expressed,GO:0005198,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr11-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS04G46780MSP domain containing protein, expressed4+View
OS10G36350MSP domain containing protein, putative, expressed10-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_04G38980No description available.Chr04+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB06G024750No description available.chr_6+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G018350Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch10-View
SL01G090910Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch01+View
SL06G034220Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV15G09430name=GSVIVG01027683001;chr15+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G35740No description available.5+View
ZM04G20600No description available.4+View


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Description
Chromosome
Strand