Anchorpoints
- Gene id
- PT02G14400
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT14G05950 | No description available. | Chr14 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G45140 | plant VAP homolog 12 plant VAP homolog 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 140; Plants - 434; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. | 2 | + | View |
AT3G60600 | vesicle associated protein (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 141; Plants - 434; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. vesicle associated protein | 3 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA05G21450 | CC_gene:Vapa,CC_gene:SCS2,CC_gene:VAPA,CC_gene:SPAC17C9.12,CC_gene:SPBC16G5.05c,CC_functional_completeness:complete,PRODUCT:MSP domain containing protein%2C expressed,GO:0005198,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr5 | - | View |
MA11G04470 | CC_gene:Vapa,CC_gene:SPAC17C9.12,CC_gene:VAPA,CC_gene:SPBC16G5.05c,CC_functional_completeness:complete,PRODUCT:MSP domain containing protein%2C expressed,GO:0005198,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr11 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS04G46780 | MSP domain containing protein, expressed | 4 | + | View |
OS10G36350 | MSP domain containing protein, putative, expressed | 10 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_04G38980 | No description available. | Chr04 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB06G024750 | No description available. | chr_6 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G018350 | Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein | ch10 | - | View |
SL01G090910 | Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein | ch01 | + | View |
SL06G034220 | Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein | ch06 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV15G09430 | name=GSVIVG01027683001; | chr15 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM05G35740 | No description available. | 5 | + | View |
ZM04G20600 | No description available. | 4 | + | View |