Anchorpoints

Gene id
PT01G24870
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT09G04250No description available.Chr09+View
PT10G19310No description available.Chr10-View
PT08G06400No description available.Chr08+View
PT16G11200No description available.Chr16+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G38080IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein2+View
AT5G58910laccase 16 laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). putative laccase, a member of laccase family of genes (17 members in Arabidopsis).5-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00019G02140No description available.supercontig_19-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA06G34450CC_gene:LAC12,CC_gene:LAC4,CC_gene:LAC2,CC_gene:LAC11,CC_gene:LAC16,CC_gene:LAC10,CC_gene:IRX12,CC_gene:LAC22,CC_functional_completeness:complete,PRODUCT:Laccase-22,GO:0055114,GO:0048046,GO:0046274,GO:0016491,GO:0008471,GO:0005507,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:1.10.3.3chr6+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G076760Laccase 1a (AHRD V1 ***- B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G13250name=GSVIVG01034003001;chr8+View
VV06G02270name=GSVIVG01024795001;chr6+View


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Gene id
Species
Description
Chromosome
Strand