Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G10160No description available.Chr03-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G60910AGAMOUS-like 8 AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MADS box gene negatively regulated by APETALA15-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G69890No description available.Bd1+View
BD1G21980No description available.Bd1-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA07G27330CC_gene:AGL3,CC_gene:TDR5,CC_gene:FBP2,CC_gene:MADS5,CC_gene:MADS1,CC_functional_completeness:complete,PRODUCT:MADS-box transcription factor 1,GO:0043565,GO:0005634,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr7+View
MA04G14930CC_gene:SEP3,CC_gene:FBP2,CC_gene:SEP2,CC_gene:MADS5,CC_gene:MADS1,CC_functional_completeness:complete,PRODUCT:MADS-box transcription factor 1,GO:0043565,GO:0005634,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr4+View
MA03G31210CC_gene:TDR4,CC_gene:AP1,CC_gene:MADS18,CC_gene:MADS14,CC_functional_completeness:complete,PRODUCT:MADS-box transcription factor 14,GO:0043565,GO:0005634,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G11614OsMADS1 - MADS-box family gene with MIKCc type-box, expressed MADS-box transcription factor 13-View
OS07G41370MADS-box transcription factor 18 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed7+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G09840No description available.Chr08+View
PT17G09970No description available.Chr17+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G042840No description available.chr_1+View
SB02G038780No description available.chr_2+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G39200No description available.scaffold_2+View
SI009G50610No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G089200MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch02+View
SL03G114830MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-boxch03-View
SL05G056620Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch05-View
SL04G005320MADS-box transcription factor (AHRD V1 **** Q8S4L4_SOLLC)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch04-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G10760name=GSVIVG01012250001;chr1-View
VV14G16100name=GSVIVG01036549001;chr14-View
VV17G04850name=GSVIVG01008140001;chr17-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G26720LOC5420457-View
ZM01G08000MADS-box transcription factor 11-View


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Gene id
Species
Description
Chromosome
Strand