Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
OSINDICA_01G57760No description available.Chr01-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G56140Protein of unknown function (DUF399 and DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 538 Blast hits to 538 proteins in 131 species: Archae - 0; Bacteria - 182; Metazoa - 33; Fungi - 6; Plants - 279; Viruses - 6; Other Eukaryotes - 32 (source: NCBI BLink). Protein of unknown function (DUF399 and DUF3411)3+View
AT5G07120sorting nexin 2B sorting nexin 2B (SNX2b); FUNCTIONS IN: phospholipid binding; INVOLVED IN: vesicle-mediated transport, intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2A (TAIR:AT5G58440.1); Has 2399 Blast hits to 2386 proteins in 279 species: Archae - 13; Bacteria - 100; Metazoa - 1366; Fungi - 555; Plants - 146; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes. Involved in vesicular trafficking from endosomes to the vacuole.5-View
AT2G40400Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). Protein of unknown function (DUF399 and DUF3411)2+View
AT5G58440sorting nexin 2A (SNX2a); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). sorting nexin 2A5-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD2G22470No description available.Bd2-View
BD2G53780No description available.Bd2-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00002G03290No description available.supercontig_2-View
CP00019G01150No description available.supercontig_19-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS05G39680PX domain containing protein, expressed5+View
OS01G61120No description available.1-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB09G023230No description available.chr_9+View
SB03G038530No description available.chr_3-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI003G21030No description available.scaffold_3-View
SI003G28650No description available.scaffold_3+View
SI005G37380No description available.scaffold_5-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G050550Sorting nexin 1 (AHRD V1 ***- Q70YZ8_BRAOL)%3B contains Interpro domain(s) IPR001683 Phox-likech06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G09830name=GSVIVG01032741001;chr13+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM08G18130No description available.8+View
ZM08G32660No description available.8+View
ZM06G22840No description available.6+View
ZM03G28100No description available.3+View
ZM06G26430No description available.6+View


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Description
Chromosome
Strand