Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
OS07G47530AAA-type ATPase family protein, putative, expressed7+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G02890AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 33727 Blast hits to 31290 proteins in 3133 species: Archae - 1605; Bacteria - 13154; Metazoa - 4868; Fungi - 3603; Plants - 2878; Viruses - 36; Other Eukaryotes - 7583 (source: NCBI BLink). AAA-type ATPase family protein1-View
AT3G05530Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. regulatory particle triple-A ATPase 5A regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink).3+View
AT3G56690encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined. Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). Cam interacting protein 1113-View
AT4G02480AAA-type ATPase family protein AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink).4-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G18160No description available.Bd1-View
BD1G62730No description available.Bd1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00327G00020No description available.supercontig_327+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA11G16330CC_gene:ATAD1,CC_gene:Atad1,CC_gene:atad1a,CC_gene:SPAST,CC_gene:Spast,CC_gene:figl-1,CC_functional_completeness:fragment,PRODUCT:AAA-type ATPase family protein%2C putative%2C expressed,GO:0017111,GO:0005524,GO:0000166,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.6.4.3chr11+View
MA08G10440CC_gene:spas,CC_gene:figl-1,CC_gene:atad1b,CC_gene:atad1a,CC_gene:ATAD1,CC_gene:MSP1,CC_gene:Atad1,CC_functional_completeness:modules,PRODUCT:Putative ATPase family AAA domain-containing protein 1,GO:0017111,GO:0005524,GO:0000166,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.6.4.3chr8+View
MA11G05740CC_gene:Spast,CC_gene:Fignl1,CC_gene:SPAST,CC_gene:ATAD1,CC_gene:Atad1,CC_functional_completeness:modules,PRODUCT:Putative ATPase family AAA domain-containing protein 1,GO:0017111,GO:0005524,GO:0000166,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.6.4.3chr11-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G21600No description available.Chr03-View
OSINDICA_07G39390No description available.Chr07+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT14G13100No description available.Chr14-View
PT05G02510No description available.Chr05-View
PT13G01680No description available.Chr13-View
PT02G20590No description available.Chr02-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB02G042560No description available.chr_2+View
SB01G035620No description available.chr_1+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G41980No description available.scaffold_9+View
SI002G43560No description available.scaffold_2-View
SI003G35060No description available.scaffold_3-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G09976026S protease regulatory subunit 6A homolog 26S protease regulatory subunit 6A homolog (AHRD V1 ***- PRS6A_SOLLC)%3B contains Interpro domain(s) IPR005937 26S proteasome subunit P45ch01+View
SL09G074950Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH)%3B contains Interpro domain(s) IPR003959 ATPase%2C AAA-type%2C corech09+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G08750name=GSVIVG01031137001;chr14+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G40720No description available.2+View
ZM01G15150No description available.1-View


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Chromosome
Strand