PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: OS01G08320
Organism: Oryza sativa ssp. japonica

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
OS05G08570	Auxin-responsive protein IAA15 OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed	5	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G80390	indole-3-acetic acid inducible 15 (IAA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1649 Blast hits to 1649 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). indole-3-acetic acid inducible 15 Member of a multigene family of Auxin responsive genes.	1	-	View
AT1G52830	indole-3-acetic acid 6 (IAA6); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1); Has 1737 Blast hits to 1736 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1736; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid. indole-3-acetic acid 6	1	-	View
AT1G15580	indole-3-acetic acid inducible 5 (IAA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1); Has 1807 Blast hits to 1806 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1806; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). indole-3-acetic acid inducible 5 auxin induced protein	1	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G04910	No description available.	Bd2	-	View
BD2G34030	No description available.	Bd2	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00023G01400	No description available.	supercontig_23	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA07G03190	CC_gene:IAA6,CC_gene:IAA13,CC_gene:IAA26,CC_gene:IAA18,CC_gene:IAA22,CC_gene:IAA27,CC_gene:IAA25,CC_functional_completeness:complete,PRODUCT:Putative Auxin-responsive protein IAA25,GO:0046983,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr7	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_01G07720	No description available.	Chr01	-	View
OSINDICA_05G07260	No description available.	Chr05	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT03G05690	No description available.	Chr03	+	View
PT01G17740	No description available.	Chr01	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB09G005430	No description available.	chr_9	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI005G12650	No description available.	scaffold_5	-	View
SI003G10390	No description available.	scaffold_3	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G120380	Auxin response factor 9 (AHRD V1 -* ARFI_ARATH)%3B contains Interpro domain(s) IPR003311 AUX/IAA protein	ch03	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV09G05620	name=GSVIVG01017158001;	chr9	+	View
VV11G05730	name=GSVIVG01015449001;	chr11	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM08G04470	No description available.	8	-	View
ZM03G03230	No description available.	3	+	View