PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: MA03G04400
Organism: Musa acuminata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
MA09G13220	CC_gene:ERF053,CC_gene:ERF062,CC_gene:ERF055,CC_gene:ERF056,CC_gene:ERF057,CC_gene:ERF058,CC_gene:ERF060,CC_gene:RAP2-4,CC_functional_completeness:modules,PRODUCT:Putative Ethylene-responsive transcription factor RAP2-4,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr9	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G11190	shine3 (SHN3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: anther dehiscence zone, fruit dehiscence zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	5	+	View
AT1G22190	Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink). The gene encodes a putative transcription factor belongings to the abiotic stress-associated DREB A-6 clade. Integrase-type DNA-binding superfamily protein	1	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS02G51670	ethylene-responsive transcription factor, putative, expressed	2	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G09420	No description available.	Chr02	+	View
PT05G16870	No description available.	Chr05	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI001G33620	No description available.	scaffold_1	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G072900	Ethylene responsive transcription factor 2b (AHRD V1 -- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding	ch04	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV18G03340	name=GSVIVG01009007001;	chr18	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM04G27660	No description available.	4	-	View