Anchorpoints

Gene id
CP00179G00440
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G02440Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). TRICHOME BIREFRINGENCE-LIKE 20 (TBL20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1391 Blast hits to 1344 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 66; Fungi - 9; Plants - 1282; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). TRICHOME BIREFRINGENCE-LIKE 203-View
AT5G15890TRICHOME BIREFRINGENCE-LIKE 21 (TBL21); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). TRICHOME BIREFRINGENCE-LIKE 21 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G11010No description available.Chr17+View
PT04G10550No description available.Chr04-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G046270Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ)%3B contains Interpro domain(s) IPR004253 Protein of unknown function DUF231%2C plantch03-View
SL02G089670Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ)%3B contains Interpro domain(s) IPR004253 Protein of unknown function DUF231%2C plantch02+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G15500name=GSVIVG01036469001;chr14-View


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Gene id
Species
Description
Chromosome
Strand