Anchorpoints

Gene id
CP00157G00500
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G13850glycine-rich RNA-binding protein 2 (GR-RBP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. glycine-rich RNA-binding protein 24+View
AT3G23830glycine-rich RNA-binding protein 4 glycine-rich RNA-binding protein 4 (GRP4); CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 2 (TAIR:AT4G13850.3); Has 39778 Blast hits to 39772 proteins in 2962 species: Archae - 777; Bacteria - 23781; Metazoa - 723; Fungi - 392; Plants - 1153; Viruses - 36; Other Eukaryotes - 12916 (source: NCBI BLink). encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G05900No description available.Chr17+View
PT01G31980No description available.Chr01+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G053780RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich proteinch05+View
SL09G092320RNA binding protein-like protein (AHRD V1 **** Q3HVL3_SOLTU)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich proteinch09+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV05G07180name=GSVIVG01021024001;chr5-View


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Gene id
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Description
Chromosome
Strand