PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: CP00152G00270
Organism: Carica papaya

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
CP00012G02880	No description available.	supercontig_12	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G21990	APS reductase 3 (APR3); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 1 (TAIR:AT4G04610.1); Has 5608 Blast hits to 5124 proteins in 1636 species: Archae - 157; Bacteria - 2658; Metazoa - 1176; Fungi - 493; Plants - 493; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink). Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. APS reductase 3	4	-	View
AT1G62180	5'adenylylphosphosulfate reductase 2 (APR2); FUNCTIONS IN: adenylyl-sulfate reductase activity, phosphoadenylyl-sulfate reductase (thioredoxin) activity; INVOLVED IN: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin), sulfate assimilation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 3 (TAIR:AT4G21990.1); Has 5381 Blast hits to 4904 proteins in 1602 species: Archae - 157; Bacteria - 2618; Metazoa - 1060; Fungi - 451; Plants - 490; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. 5'adenylylphosphosulfate reductase 2	1	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA04G34370	CC_gene:PAP5,CC_gene:bcn,CC_gene:phrB,CC_gene:phr,CC_gene:APR2,CC_gene:APR3,CC_gene:APR1,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr4	-	View
MA02G14160	CC_gene:cysH,CC_gene:APR2,CC_gene:APR1,CC_gene:APR3,CC_functional_completeness:fragment,PRODUCT:5'-adenylylsulfate reductase 3%2C chloroplastic,GO:0055114,GO:0045454,GO:0019419,GO:0019344,GO:0016740,GO:0008152,GO:0004604,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:1.8.4.9	chr2	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS07G32570	Probable 5'-adenylylsulfate reductase 1, chloroplastic OsAPRL1 adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed OsAPRL1 adenosine 5%27-phosphosulfate reductase-like OsAPRL1, expressed	7	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_07G25470	No description available.	Chr07	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G22740	No description available.	Chr02	+	View
PT14G15420	No description available.	Chr14	+	View
PT04G01210	No description available.	Chr04	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB02G034370	No description available.	chr_2	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI002G33570	No description available.	scaffold_2	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV12G10870	name=GSVIVG01030440001;	chr12	+	View
VV10G00940	name=GSVIVG01012712001;	chr10	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM07G22720	adenosine 5'-phosphosulfate reductase-like1;adenosine 5'-phosphosulfate reductase-like1	7	-	View