Anchorpoints

Gene id
CP00139G00440
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G28540RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 940 Blast hits to 717 proteins in 219 species: Archae - 0; Bacteria - 26; Metazoa - 247; Fungi - 180; Plants - 143; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein2+View
AT5G60170RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1). RNA binding (RRM/RBD/RNP motifs) family protein5+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G072590CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT)%3B contains Interpro domain(s) IPR003954 RNA recognition%2C region 1ch11+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G04660name=GSVIVG01025102001;chr6+View
VV08G01780name=GSVIVG01025550001;chr8+View


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Gene id
Species
Description
Chromosome
Strand