Anchorpoints

Gene id
CP00097G00830
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G54640Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein. Histone superfamily protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 (RAT5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, response to bacterium, response to wounding; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 2 (TAIR:AT4G27230.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View
AT3G20670Encodes HTA13, a histone H2A protein. histone H2A 13 histone H2A 13 (HTA13); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 10 (TAIR:AT1G51060.1); Has 3900 Blast hits to 3895 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 2556; Fungi - 297; Plants - 612; Viruses - 4; Other Eukaryotes - 431 (source: NCBI BLink).3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G25390No description available.Bd1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G13140No description available.Chr11+View
PT01G41570No description available.Chr01+View
PT04G03130No description available.Chr04-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G006560Histone H2A (AHRD V1 ***- A9PCS9_POPTR)%3B contains Interpro domain(s) IPR002119 Histone H2Ach10-View
SL12G005270Histone H2A (AHRD V1 ***- D7KGW6_ARALY)%3B contains Interpro domain(s) IPR002119 Histone H2Ach12-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G04840name=GSVIVG01014580001;chr19+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G23710No description available.7+View


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Gene id
Species
Description
Chromosome
Strand