Anchorpoints

Gene id
CP00092G00360
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G57510ADPG1; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase abscission zone A. thaliana (TAIR:AT2G41850.1); Has 4405 Blast hits to 4383 proteins in 555 species: Archae - 8; Bacteria - 1458; Metazoa - 14; Fungi - 1288; Plants - 1499; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). Pectin lyase-like superfamily protein Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.3-View
AT2G41850polygalacturonase abscission zone A. thaliana (PGAZAT); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, floral organ abscission, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G57510.1); Has 4465 Blast hits to 4447 proteins in 569 species: Archae - 8; Bacteria - 1510; Metazoa - 14; Fungi - 1290; Plants - 1500; Viruses - 5; Other Eukaryotes - 138 (source: NCBI BLink). ADPG2. polygalacturonase abscission zone A. thaliana2-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA01G23800CC_gene:ADPG1,CC_gene:At1g80170,CC_gene:ADPG2,CC_gene:PG2,CC_gene:QRT2,CC_functional_completeness:complete,PRODUCT:Polygalacturonase,GO:0005975,GO:0004650,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.2.1.67chr1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G05270No description available.Chr06-View
PT09G06040No description available.Chr09-View
PT16G05480No description available.Chr16+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G015530Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28ch04+View
SL01G087280Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28ch01+View
SL10G080210Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28 Polygalacturonase-2ch10-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G07610name=GSVIVG01033303001;chr8+View


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