Anchorpoints
- Gene id
- CP00092G00360
- Organism
- Carica papaya
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G57510 | ADPG1; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase abscission zone A. thaliana (TAIR:AT2G41850.1); Has 4405 Blast hits to 4383 proteins in 555 species: Archae - 8; Bacteria - 1458; Metazoa - 14; Fungi - 1288; Plants - 1499; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). Pectin lyase-like superfamily protein Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. | 3 | - | View |
AT2G41850 | polygalacturonase abscission zone A. thaliana (PGAZAT); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification involved in abscission, fruit dehiscence, floral organ abscission, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G57510.1); Has 4465 Blast hits to 4447 proteins in 569 species: Archae - 8; Bacteria - 1510; Metazoa - 14; Fungi - 1290; Plants - 1500; Viruses - 5; Other Eukaryotes - 138 (source: NCBI BLink). ADPG2. polygalacturonase abscission zone A. thaliana | 2 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA01G23800 | CC_gene:ADPG1,CC_gene:At1g80170,CC_gene:ADPG2,CC_gene:PG2,CC_gene:QRT2,CC_functional_completeness:complete,PRODUCT:Polygalacturonase,GO:0005975,GO:0004650,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.2.1.67 | chr1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT06G05270 | No description available. | Chr06 | - | View |
PT09G06040 | No description available. | Chr09 | - | View |
PT16G05480 | No description available. | Chr16 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL04G015530 | Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28 | ch04 | + | View |
SL01G087280 | Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28 | ch01 | + | View |
SL10G080210 | Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28 Polygalacturonase-2 | ch10 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV08G07610 | name=GSVIVG01033303001; | chr8 | + | View |