PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: CP00016G01090
Organism: Carica papaya

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
CP00009G01620	No description available.	supercontig_9	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G06370	sodium hydrogen exchanger 4 sodium hydrogen exchanger 4 (NHX4); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, sodium ion transport; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 5892 Blast hits to 5885 proteins in 1663 species: Archae - 61; Bacteria - 4002; Metazoa - 840; Fungi - 131; Plants - 419; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). member of Sodium proton exchanger family	3	-	View
AT3G05030	Encodes a vacuolar K+/H+ exchanger essential for active K+ uptake at the tonoplast and involved in regulating stomatal closure. sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5612 Blast hits to 5606 proteins in 1611 species: Archae - 51; Bacteria - 3727; Metazoa - 852; Fungi - 131; Plants - 439; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink). sodium hydrogen exchanger 2	3	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G18360	No description available.	Bd1	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA08G22550	CC_gene:SLC9A8,CC_gene:Slc9a8,CC_gene:NHX4,CC_gene:NHX3,CC_gene:NHX1,CC_gene:NHX2,CC_functional_completeness:complete,PRODUCT:Sodium/hydrogen exchanger 2,GO:0055085,GO:0016021,GO:0015385,GO:0015299,GO:0006885,GO:0006814,GO:0006812,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr8	-	View
MA06G20870	CC_gene:SLC9A8,CC_gene:Slc9a8,CC_gene:NHX4,CC_gene:NHX3,CC_gene:NHX1,CC_gene:NHX2,CC_functional_completeness:complete,PRODUCT:Sodium/hydrogen exchanger 2,GO:0055085,GO:0016021,GO:0015385,GO:0015299,GO:0006885,GO:0006814,GO:0006812,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS07G47100	transporter, monovalent cation%3Aproton antiporter-2 family, putative, expressed	7	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_07G38950	No description available.	Chr07	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G04510	No description available.	Chr05	-	View
PT14G13490	No description available.	Chr14	+	View
PT13G03170	No description available.	Chr13	-	View
PT10G03150	No description available.	Chr10	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB02G042190	No description available.	chr_2	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI002G43270	No description available.	scaffold_2	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G067710	Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA3_SOLLC)%3B contains Interpro domain(s) IPR018407 Na+/H+ exchanger%2C isoforms 1-4%2C conserved region	ch01	+	View
SL01G098190	Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA2_SOLLC)%3B contains Interpro domain(s) IPR018407 Na+/H+ exchanger%2C isoforms 1-4%2C conserved region	ch01	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G03550	name=GSVIVG01017814001;	chr5	+	View
VV14G04400	name=GSVIVG01021972001;	chr14	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM07G29610	Sodium/hydrogen exchanger Fragment	7	+	View