PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: CP00009G01820
Organism: Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G02570	Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2243 Blast hits to 2199 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 500; Plants - 373; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink). cullin 1	4	+	View
AT1G02980	cullin 2 (CUL2); FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: cell cycle, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, chloroplast envelope; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: Cullin family protein (TAIR:AT1G43140.1); Has 2240 Blast hits to 2201 proteins in 240 species: Archae - 0; Bacteria - 18; Metazoa - 947; Fungi - 508; Plants - 372; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). encodes an Arabidopsis cullin cullin 2	1	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G35820	No description available.	Bd2	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G70920	cullin-1, putative, expressed	1	+	View
OS05G05700	cullin, putative, expressed	5	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_05G04590	No description available.	Chr05	-	View
OSINDICA_01G67270	No description available.	Chr01	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT10G02380	No description available.	Chr10	-	View
PT13G02000	No description available.	Chr13	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB03G045160	No description available.	chr_3	+	View
SB09G003820	No description available.	chr_9	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI003G03770	No description available.	scaffold_3	+	View
SI005G45570	No description available.	scaffold_5	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G084520	Ubiquitin-protein ligase Cullin 4 (AHRD V1 **** D8RM97_SELML)%3B contains Interpro domain(s) IPR001373 Cullin%2C N-terminal	ch06	-	View
SL06G008710	Cullin 1B (AHRD V1 ***- Q711G7_TOBAC)%3B contains Interpro domain(s) IPR001373 Cullin%2C N-terminal	ch06	+	View
SL09G074680	Cullin 1B (AHRD V1 ***- Q711G7_TOBAC)%3B contains Interpro domain(s) IPR001373 Cullin%2C N-terminal	ch09	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV07G03630	name=GSVIVG01010966001;	chr7	+	View