PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: CP00006G03580
Organism: Carica papaya

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
CP00026G01730	No description available.	supercontig_26	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G17950	WUSCHEL (WUS); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 617 Blast hits to 617 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 2; Plants - 575; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). Homeodomain-like superfamily protein Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of the WUS expression domain controls the size of the stem cell population through WUS indirectly activating the expression of CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif. WUS is also involved in cell differentiation during anther development.	2	-	View
AT4G35550	WUSCHEL related homeobox 13 (WOX13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 14 (TAIR:AT1G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WUSCHEL related homeobox 13	4	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA05G30040	CC_gene:WOX1,CC_gene:WOX3A,CC_gene:WOX3B,CC_gene:WOX2,CC_gene:WOX3,CC_functional_completeness:complete,PRODUCT:Putative PRESSED FLOWER a,GO:0043565,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G00880	No description available.	Chr02	-	View
PT05G10180	No description available.	Chr05	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G082670	WUSCHEL-related homeobox 14 (AHRD V1 ***- B6T910_MAIZE)%3B contains Interpro domain(s) IPR001356 Homeobox	ch02	-	View