Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- CP00006G00120
- Organism
- Carica papaya
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G67570 | Tetratricopeptide repeat (TPR)-like superfamily protein DELAYED GREENING 1 (DG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G30610.2); Has 18472 Blast hits to 7295 proteins in 194 species: Archae - 0; Bacteria - 17; Metazoa - 30; Fungi - 92; Plants - 17734; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression. | 5 | + | View |
Musa acuminata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MA07G26780 | CC_gene:At1g09900,CC_gene:At2g18940,CC_gene:At1g62670,CC_gene:At2g31400,CC_gene:PTAC2,CC_gene:At5g02860,CC_gene:EMB2279,CC_gene:DG1,CC_functional_completeness:complete,PRODUCT:Putative Pentatricopeptide repeat-containing protein At5g67570%2C chloroplastic,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr7 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT07G00490 | No description available. | Chr07 | + | View |
Setaria italica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SI009G36570 | No description available. | scaffold_9 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL02G092310 | Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L2Y3_ARALY)%3B contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | ch02 | - | View |