Anchorpoints

Gene id
CP00002G02790
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G30470high-level expression of sugar-inducible gene 2 high-level expression of sugar-inducible gene 2 (HSI2); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: HSI2-like 1 (TAIR:AT4G32010.1); Has 1263 Blast hits to 1242 proteins in 97 species: Archae - 0; Bacteria - 5; Metazoa - 31; Fungi - 0; Plants - 1168; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50?M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.2-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G17680No description available.Bd1+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G48200B3 DNA binding domain containing protein, putative, expressed B3 domain-containing protein Os07g06797007-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_07G40130No description available.Chr07-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G13650No description available.Chr16-View
PT13G15750No description available.Chr13-View
PT06G10830No description available.Chr06-View
PT19G13030No description available.Chr19-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB02G043000No description available.chr_2-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G44270No description available.scaffold_2-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G082520AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR)%3B contains Interpro domain(s) IPR003340 Transcriptional factor B3ch06-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G00380name=GSVIVG01024559001;chr6-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G30140No description available.7-View


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Gene id
Species
Description
Chromosome
Strand