Anchorpoints

Gene id
CP00001G00630
Organism
Carica papaya

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CP00014G01160No description available.supercontig_14-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G26670member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles. VTI1B; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 841 Blast hits to 839 proteins in 213 species: Archae - 2; Bacteria - 11; Metazoa - 288; Fungi - 144; Plants - 215; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). Vesicle transport v-SNARE family protein1+View
AT3G29100vesicle transport V-snare 13 (VTI13); FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 695 Blast hits to 693 proteins in 200 species: Archae - 2; Bacteria - 0; Metazoa - 259; Fungi - 142; Plants - 163; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). vesicle transport V-snare 13 Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G09100No description available.Chr08-View
PT17G08770No description available.Chr17-View
PT10G16430No description available.Chr10+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G115760Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU)%3B contains Interpro domain(s) IPR007705 Vesicle transport v-SNAREch03+View
SL05G013050Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU)%3B contains Interpro domain(s) IPR007705 Vesicle transport v-SNAREch05+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03340name=GSVIVG01007964001;chr17-View
VV01G10970name=GSVIVG01012494001;chr1+View


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Gene id
Species
Description
Chromosome
Strand