Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BD3G45130No description available.Bd3-View
BD5G09640No description available.Bd5-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G22220Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor. E2F transcription factor 1 (E2F1); CONTAINS InterPro DOMAIN/s: Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F transcription factor 3 (TAIR:AT2G36010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). E2F transcription factor 15+View
AT2G36010E2F transcription factor 3 (E2F3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F transcription factor 1 (TAIR:AT5G22220.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). E2F transcription factor 3 Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00195G00360No description available.supercontig_195-View
CP00104G00520No description available.supercontig_104+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA06G07270CC_gene:E2F2,CC_gene:E2F3,CC_gene:E2f3,CC_gene:E2F5,CC_gene:E2f4,CC_gene:E2f5,CC_gene:E2F4,CC_functional_completeness:complete,PRODUCT:E2F family transcription factor protein%2C putative%2C expressed,GO:0005667,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6-View
MA10G16150CC_gene:E2f2,CC_gene:E2F5,CC_gene:E2f4,CC_gene:E2F4,CC_gene:E2f5,CC_gene:E2f3,CC_gene:E2F3,CC_functional_completeness:complete,PRODUCT:E2F family transcription factor protein%2C putative%2C expressed,GO:0005667,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View
MA06G18730CC_gene:E2F2,CC_gene:E2f4,CC_gene:E2F3,CC_gene:E2F4,CC_gene:E2f3,CC_gene:E2F5,CC_gene:E2f5,CC_functional_completeness:complete,PRODUCT:E2F family transcription factor protein%2C putative%2C expressed,GO:0005667,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr6+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G33430E2F family transcription factor protein, putative, expressed2-View
OS12G06200E2F family transcription factor protein, putative, expressed12-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_02G32160No description available.Chr02-View
OSINDICA_12G05100No description available.Chr12-View
OSINDICA_04G26110No description available.Chr04-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G20510No description available.Chr06+View
PT16G07230No description available.Chr16+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G021970No description available.chr_4-View
SB06G016190No description available.chr_6-View
SB08G003670No description available.chr_8-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI001G19440No description available.scaffold_1-View
SI007G30470No description available.scaffold_7+View
SI007G09860No description available.scaffold_7-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G068800Transcription factor (E2F) (AHRD V1 ***- Q9FNS0_CHERU)%3B contains Interpro domain(s) IPR015633 E2F Familych11-View
SL06G074010Transcription factor (E2F) (AHRD V1 *-*- Q9FNS0_CHERU)%3B contains Interpro domain(s) IPR015633 E2F Familych06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G12700name=GSVIVG01033931001;chr8+View
VV06G09580name=GSVIVG01036059001;chr6-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G29960No description available.5-View
ZM10G02210No description available.10-View
ZM02G15790No description available.2+View


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Gene id
Species
Description
Chromosome
Strand