Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BD1G30730No description available.Bd1-View
BD3G19927No description available.Bd3+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G32040KNOTTED1-like homeobox gene 5 A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. KNOTTED1-like homeobox gene 5 (KNAT5); CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.2); Has 6199 Blast hits to 6196 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2065; Fungi - 300; Plants - 3657; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).4+View
AT5G11060KNOTTED1-like homeobox gene 4 (KNAT4); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 3 (TAIR:AT5G25220.1); Has 5905 Blast hits to 5890 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 312; Plants - 3367; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). KNOTTED1-like homeobox gene 4 A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.5+View
AT5G25220KNOTTED1-like homeobox gene 3 A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00046G00920No description available.supercontig_46-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA01G27050CC_gene:HOS59,CC_gene:HOS58,CC_gene:KNAT5,CC_gene:LET12,CC_gene:OSH45,CC_gene:KNAT4,CC_gene:KNAT3,CC_functional_completeness:complete,PRODUCT:Homeobox protein knotted-1-like 3,GO:0043565,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr1+View
MA10G06110CC_gene:HOS59,CC_gene:KNAT5,CC_gene:HOS58,CC_gene:LET12,CC_gene:KNAT4,CC_gene:OSH45,CC_gene:KNAT3,CC_functional_completeness:modules,PRODUCT:homeobox protein knotted-1%2C putative%2C expressed,GO:0043565,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View
MA03G13670CC_gene:HOS59,CC_gene:HOS58,CC_gene:KNAT5,CC_gene:LET12,CC_gene:OSH45,CC_gene:KNAT4,CC_gene:KNAT3,CC_functional_completeness:modules,PRODUCT:homeobox protein knotted-1%2C putative%2C expressed,GO:0043565,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3-View
MA04G20990CC_gene:HOS59,CC_gene:HOS58,CC_gene:KNAT5,CC_gene:LET12,CC_gene:KNAT4,CC_gene:OSH45,CC_gene:KNAT3,CC_functional_completeness:complete,PRODUCT:Homeobox protein knotted-1-like 3,GO:0043565,GO:0005634,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr4-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G08544Homeobox protein knotted-1-like 2 homeobox protein knotted-1, putative, expressed2+View
OS06G43860homeobox protein knotted-1, putative, expressed Homeobox protein knotted-1-like 116-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_06G39660No description available.Chr06-View
OSINDICA_02G08360No description available.Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT18G11410No description available.Chr18+View
PT18G02270No description available.Chr18+View
PT06G19000No description available.Chr06+View
PT06G25940No description available.Chr06-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G005620No description available.chr_4+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G20380No description available.scaffold_4+View
SI001G06390No description available.scaffold_1-View
SI006G10720No description available.scaffold_6-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G010410Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE)%3B contains Interpro domain(s) IPR005541 KNOX2ch12+View
SL07G007120Homeobox protein knotted-1-like LET12 Homeobox protein knotted-1-like 3 (AHRD V1 *-*- B6T3D1_MAIZE)%3B contains Interpro domain(s) IPR005541 KNOX2ch07+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G12730name=GSVIVG01035921001;chr4+View
VV11G01750name=GSVIVG01012897001;chr11-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G21500Homeobox protein knotted-1-like 7 Fragment Homeobox protein knotted-1-like 6 Homeobox protein knotted-1-like 75-View
ZM04G38790Homeobox protein knotted-1-like 6 KNOX family class 2 homeodomain protein;Homeobox protein knotted-1-like 7 Fragment Homeobox protein knotted-1-like 74+View
ZM09G14230Homeobox protein knotted-1-like 2 Homeobox protein knotted-1-like 2 Fragment ;Homeobox protein knotted-1-like 2 Fragment9+View


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