Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BD3G19710No description available.Bd3-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G68360C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1); Has 1137 Blast hits to 1135 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1124; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). C2H2 and C2HC zinc fingers superfamily protein1-View
AT1G80730zinc-finger protein 1 (ZFP1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: photomorphogenesis; LOCATED IN: intracellular; EXPRESSED IN: inflorescence meristem, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G10970.1); Has 1054 Blast hits to 1054 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1051; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). zinc-finger protein 1 Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.1-View
AT5G10970C2H2 and C2HC zinc fingers superfamily protein C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View
AT5G25160zinc finger protein 3 (ZFP3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G10970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). zinc finger protein 3 Encodes a zinc finger protein containing only a single zinc finger.5+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00010G00930No description available.supercontig_10+View
CP00127G00080No description available.supercontig_127-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G08510ZOS2-04 - C2H2 zinc finger protein, expressed2-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_02G08310No description available.Chr02-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G26170No description available.Chr06-View
PT06G06380No description available.Chr06+View
PT01G04750No description available.Chr01+View
PT03G18060No description available.Chr03-View
PT18G02140No description available.Chr18+View
PT18G12380No description available.Chr18+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI001G06430No description available.scaffold_1+View
SI008G08090No description available.scaffold_8+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL07G006880Zinc-finger protein 1 (AHRD V1 *-*- D7KX25_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech07+View
SL03G117070Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech03+View
SL06G068390Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY)%3B contains Interpro domain(s) IPR007087 Zinc finger%2C C2H2-typech06-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G12580name=GSVIVG01035905001;chr4+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G21390No description available.5-View


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Chromosome
Strand