Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BD1G62710No description available.Bd1+View
BD2G59800No description available.Bd2-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G02900rapid alkalinization factor 1 rapid alkalinization factor 1 (RALF1); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 267 Blast hits to 267 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling.1-View
AT3G16570rapid alkalinization factor 23 rapid alkalinization factor 23 (RALF23); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 261 Blast hits to 261 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.3+View
AT4G15800ralf-like 33 (RALFL33); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ralf-like 33 Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.4+View
AT3G05490ralf-like 22 ralf-like 22 (RALFL22); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 266 Blast hits to 266 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.3+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00009G02020No description available.supercontig_9+View
CP00048G00900No description available.supercontig_48+View
CP00016G01730No description available.supercontig_16-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA03G24640CC_gene:MATN3,CC_gene:purT,CC_functional_completeness:fragment,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_20.assembly12x (Fragment),CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3+View
MA07G03810CC_gene:AOC3,CC_gene:gatA,CC_gene:thrB,CC_gene:Rv2282c,CC_gene:Mb2303c,CC_gene:AGA.1,CC_functional_completeness:fragment,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_20.assembly12x (Fragment),CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr7+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G70690RALFL1 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed1-View
OS03G22440RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed3-View
OS01G25540RALFL6 - Rapid ALkalinization Factor RALF family protein precursor, expressed1-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_01G67060No description available.Chr01-View
OSINDICA_03G21630No description available.Chr03-View
OSINDICA_01G24710No description available.Chr01-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G01740No description available.Chr13-View
PT14G13180No description available.Chr14-View
PT05G02580No description available.Chr05-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G044920No description available.chr_3-View
SB03G014360No description available.chr_3-View
SB01G035600No description available.chr_1+View
SB02G042530No description available.chr_2+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI005G16560No description available.scaffold_5-View
SI009G41960No description available.scaffold_9+View
SI002G43600No description available.scaffold_2-View
SI005G45340No description available.scaffold_5-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G099520Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH)%3B contains Interpro domain(s) IPR008801 Rapid ALkalinization Factorch01-View
SL09G074890Rapid alkalinization factor 1 (AHRD V1 **-- Q84UC9_9ROSI)%3B contains Interpro domain(s) IPR008801 Rapid ALkalinization Factorch09+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV05G03110name=GSVIVG01017757001;chr5+View
VV07G08040name=GSVIVG01027973001;chr7+View
VV14G08850name=GSVIVG01031147001;chr14-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G29870No description available.7+View
ZM08G28230RALFL338+View
ZM01G15170rapid ALkalinization Factor family protein1-View


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Gene id
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Description
Chromosome
Strand