Anchorpoints
- Gene id
- BD1G18185
- Organism
- Brachypodium distachyon
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD1G62710 | No description available. | Bd1 | + | View |
BD2G59800 | No description available. | Bd2 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G02900 | rapid alkalinization factor 1 rapid alkalinization factor 1 (RALF1); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 267 Blast hits to 267 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling. | 1 | - | View |
AT3G16570 | rapid alkalinization factor 23 rapid alkalinization factor 23 (RALF23); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 261 Blast hits to 261 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. | 3 | + | View |
AT4G15800 | ralf-like 33 (RALFL33); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ralf-like 33 Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | 4 | + | View |
AT3G05490 | ralf-like 22 ralf-like 22 (RALFL22); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 266 Blast hits to 266 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | 3 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00009G02020 | No description available. | supercontig_9 | + | View |
CP00048G00900 | No description available. | supercontig_48 | + | View |
CP00016G01730 | No description available. | supercontig_16 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA03G24640 | CC_gene:MATN3,CC_gene:purT,CC_functional_completeness:fragment,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_20.assembly12x (Fragment),CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr3 | + | View |
MA07G03810 | CC_gene:AOC3,CC_gene:gatA,CC_gene:thrB,CC_gene:Rv2282c,CC_gene:Mb2303c,CC_gene:AGA.1,CC_functional_completeness:fragment,PRODUCT:Whole genome shotgun sequence of line PN40024%2C scaffold_20.assembly12x (Fragment),CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr7 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS01G70690 | RALFL1 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed | 1 | - | View |
OS03G22440 | RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed | 3 | - | View |
OS01G25540 | RALFL6 - Rapid ALkalinization Factor RALF family protein precursor, expressed | 1 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_01G67060 | No description available. | Chr01 | - | View |
OSINDICA_03G21630 | No description available. | Chr03 | - | View |
OSINDICA_01G24710 | No description available. | Chr01 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT13G01740 | No description available. | Chr13 | - | View |
PT14G13180 | No description available. | Chr14 | - | View |
PT05G02580 | No description available. | Chr05 | - | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB03G044920 | No description available. | chr_3 | - | View |
SB03G014360 | No description available. | chr_3 | - | View |
SB01G035600 | No description available. | chr_1 | + | View |
SB02G042530 | No description available. | chr_2 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI005G16560 | No description available. | scaffold_5 | - | View |
SI009G41960 | No description available. | scaffold_9 | + | View |
SI002G43600 | No description available. | scaffold_2 | - | View |
SI005G45340 | No description available. | scaffold_5 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G099520 | Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH)%3B contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor | ch01 | - | View |
SL09G074890 | Rapid alkalinization factor 1 (AHRD V1 **-- Q84UC9_9ROSI)%3B contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor | ch09 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV05G03110 | name=GSVIVG01017757001; | chr5 | + | View |
VV07G08040 | name=GSVIVG01027973001; | chr7 | + | View |
VV14G08850 | name=GSVIVG01031147001; | chr14 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM07G29870 | No description available. | 7 | + | View |
ZM08G28230 | RALFL33 | 8 | + | View |
ZM01G15170 | rapid ALkalinization Factor family protein | 1 | - | View |