PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G59550
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G39720	RING-H2 finger C2A RING-H2 finger C2A (RHC2A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8622 Blast hits to 8603 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 807; Plants - 4301; Viruses - 28; Other Eukaryotes - 1073 (source: NCBI BLink). Encodes a putative RING-H2 finger protein RHC2a.	2	-	View
AT3G46620	zinc finger (C3HC4-type RING finger) family protein Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants. zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 2388; Fungi - 760; Plants - 4652; Viruses - 43; Other Eukaryotes - 1027 (source: NCBI BLink).	3	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00081G01150	No description available.	supercontig_81	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA07G15430	CC_gene:rnf126,CC_gene:Rnf126,CC_gene:RNF126,CC_gene:rnf181,CC_gene:At3g19950,CC_gene:RING1,CC_functional_completeness:modules,PRODUCT:Putative E3 ubiquitin-protein ligase RING1,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr7	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G16480	zinc finger family protein, putative, expressed	3	+	View
OS01G62640	zinc finger, C3HC4 type domain containing protein, expressed	1	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G14860	No description available.	Chr03	+	View
OSINDICA_01G59380	No description available.	Chr01	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G24330	No description available.	Chr01	-	View
PT09G03480	No description available.	Chr09	-	View
PT08G05810	No description available.	Chr08	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB01G039760	No description available.	chr_1	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI005G38730	No description available.	scaffold_5	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G011610	RING finger protein 13 (AHRD V1 *--- RNF13_CHICK)%3B contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117	ch04	+	View
SL06G005650	RING finger protein 126 (AHRD V1 *--- RN126_XENTR)	ch06	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV06G03230	name=GSVIVG01024920001;	chr6	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM09G23920	No description available.	9	-	View
ZM01G11110	No description available.	1	+	View