Expansion plot
Gene family finder
Ks-graphs
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Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT5G58910
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G38080 | IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein | 2 | + | View |
Orthologs (inter-species colinear regions)
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT09G04250 | No description available. | Chr09 | + | View |
| PT10G19310 | No description available. | Chr10 | - | View |
| PT01G24870 | No description available. | Chr01 | + | View |
| PT08G06400 | No description available. | Chr08 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL06G076760 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccase | ch06 | + | View |
| SL12G094470 | Laccase-2 (AHRD V1 **-- LAC2_ORYSJ)%3B contains Interpro domain(s) IPR001117 Multicopper oxidase%2C type 1 | ch12 | + | View |
| SL09G011960 | Laccase (AHRD V1 ***- O24042_LIRTU)%3B contains Interpro domain(s) IPR017761 Laccase | ch09 | + | View |
| SL10G085090 | Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccase | ch10 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV13G03930 | name=GSVIVG01016372001; | chr13 | + | View |
| VV06G02270 | name=GSVIVG01024795001; | chr6 | + | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM03G28090 | L-ascorbate oxidase | 3 | - | View |