PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G54430
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G27320	Adenine nucleotide alpha hydrolases-like superfamily protein Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase. PHOS34; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G54430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	4	-	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G51890	No description available.	Bd2	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA06G19670	CC_gene:MSMEG_3950,CC_gene:Rv2026c,CC_gene:metE,CC_gene:sll1388,CC_gene:MJ0531,CC_gene:yxiE,CC_gene:SPAC167.05,CC_gene:At3g01520,CC_functional_completeness:complete,PRODUCT:universal stress protein domain containing protein%2C putative%2C expressed,GO:0006950,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G57450	universal stress protein domain containing protein, putative, expressed	1	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_01G54470	No description available.	Chr01	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT11G12550	No description available.	Chr11	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI005G34930	No description available.	scaffold_5	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL10G006760	Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR)%3B contains Interpro domain(s) IPR006016 UspA	ch10	-	View
SL07G063680	CHP-rich zinc finger protein-like (AHRD V1 *--- Q84S20_ORYSJ)%3B contains Interpro domain(s) IPR006016 UspA	ch07	+	View
SL07G053200	Universal stress protein (Usp) (AHRD V1 **-- A2Q2X4_MEDTR)%3B contains Interpro domain(s) IPR006016 UspA	ch07	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV12G00320	name=GSVIVG01000443001;	chr12	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM03G30120	No description available.	3	+	View