PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G47100
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G17615	calcineurin B-like protein 1 (CBL1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Calcineurin B protein (InterPro:IPR015757), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 9 (TAIR:AT5G47100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). calcineurin B-like protein 1 Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	4	+	View

Orthologs (inter-species colinear regions)

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_10G31860	No description available.	Chr10	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G15020	No description available.	Chr01	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB01G028750	No description available.	chr_1	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI009G32780	No description available.	scaffold_9	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL08G077770	Calcineurin B-like calcium binding protein (AHRD V1 *- B2ZYT8_VICFA)%3B contains Interpro domain(s) IPR015757 Calcineurin B protein	ch08	-	View
SL08G007160	Calcineurin B-like calcium binding protein (AHRD V1 *- B2ZYT8_VICFA)%3B contains Interpro domain(s) IPR015757 Calcineurin B protein	ch08	-	View
SL06G060980	Calcineurin B-like protein 01 (AHRD V1 **-- C4P7Y8_VITVI)%3B contains Interpro domain(s) IPR015757 Calcineurin B protein	ch06	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV02G00740	name=GSVIVG01004840001;	chr2	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM09G17850	calcineurin B-like protein 9	9	-	View