Anchorpoints

Gene id
AT5G41030
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G27010'TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20' (TCP20); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G41030.1); Has 543 Blast hits to 539 proteins in 120 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes. TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 203-View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD2G59240No description available.Bd2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00070G01200No description available.supercontig_70-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA05G25650CC_gene:PCF2,CC_gene:PCF3,CC_gene:TCP8,CC_gene:TCP19,CC_gene:TCP9,CC_gene:TCP14,CC_gene:TCP15,CC_gene:TCP20,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G69980TCP family transcription factor, putative, expressed1+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_01G66180No description available.Chr01+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G32710No description available.Chr01-View
PT01G06000No description available.Chr01+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G044320No description available.chr_3+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G094290TCP family transcription factor (AHRD V1 ***- A6MCZ2_9ORYZ)%3B contains Interpro domain(s) IPR005333 Transcription factor%2C TCPch02+View
SL02G068200TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ)%3B contains Interpro domain(s) IPR005333 Transcription factor%2C TCPch02+View


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Gene id
Species
Description
Chromosome
Strand