PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G37770
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G66400	Encodes a calmodulin-like protein. Regulates nitric oxide levels and transition to flowering. calmodulin like 23 calmodulin like 23 (CML23); FUNCTIONS IN: calcium ion binding; INVOLVED IN: regulation of flower development, regulation of nitric oxide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1); Has 30871 Blast hits to 18969 proteins in 1622 species: Archae - 1; Bacteria - 165; Metazoa - 12615; Fungi - 7465; Plants - 6190; Viruses - 4; Other Eukaryotes - 4431 (source: NCBI BLink).	1	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00116G00320	No description available.	supercontig_116	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_02G48360	No description available.	Chr02	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G12620	No description available.	Chr17	-	View
PT04G08940	No description available.	Chr04	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB04G028770	No description available.	chr_4	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI001G32220	No description available.	scaffold_1	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G091480	Calmodulin 4 (AHRD V1 ***- Q6WEH7_MOUSE)%3B contains Interpro domain(s) IPR011992 EF-Hand type	ch02	-	View